View Single Post
Old 02-11-2016, 12:17 PM   #2
Senior Member
Location: East Coast USA

Join Date: Feb 2008
Posts: 7,087

Aligning sequences in pairs provides spatial context to aligners (not sure which one you used). Just do the alignment again this time using both reads. You can then merge the resulting bam files if the same sample ran in more than one lane.
GenoMax is offline   Reply With Quote