SEQanswers - View Single Post - Enable pairing in a bam file separately aligned by lanes

ty23991 · 02-11-2016, 12:54 PM

I used bowtie2
I have two separate bam files. If i understand your suggestion correctly, i align those files (converting them to fastq) and run the paired reads alignment. right ?

02-11-2016, 12:54 PM	#3
ty23991 Member Location: New York NY Join Date: May 2015 Posts: 24	I used bowtie2 I have two separate bam files. If i understand your suggestion correctly, i align those files (converting them to fastq) and run the paired reads alignment. right ?