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Old 09-18-2020, 07:24 AM   #5
Location: NJ

Join Date: Oct 2012
Posts: 97

Originally Posted by GenoMax View Post
I just tried the script and was able to get it to work (did not let it finish). It started making two files. renamed.fa.gz (which has fasta sequences) and badHeaders.txt.

Check to see if you are able to directly access NCBI FTP server from machine you are running this on.
It works for me too, but it will eventually error out when the bad headers exceed more than 5000...
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