SEQanswers - View Single Post - reference-free SNP discovery

pierre350d · 02-07-2011, 01:28 AM

Dear Marius,

At INRIA, France we developped an algorithm, called kisSnp that compares two sets of raw reads. It detects from these sets SNP polymorphism.

We have a public validated Java version here: http://alcovna.genouest.org/kissnp/ and a lighter C version, not yet fully validated but that you could test if you're interested.

Pierre

02-07-2011, 01:28 AM	#4
pierre350d Junior Member Location: rennes, france Join Date: Nov 2008 Posts: 7	Dear Marius, At INRIA, France we developped an algorithm, called kisSnp that compares two sets of raw reads. It detects from these sets SNP polymorphism. We have a public validated Java version here: http://alcovna.genouest.org/kissnp/ and a lighter C version, not yet fully validated but that you could test if you're interested. Pierre