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Old 06-11-2011, 09:33 AM   #1
1bioinfo
Junior Member
 
Location: Toronto

Join Date: Jun 2011
Posts: 1
Default finding gene from scaffolds, no annotation available

Hello,

I have all scaffolds of a bird genome from Illumina sequencing platform, I blast it against chicken genome to find the genes. Since there are millions of scaffolds it takes too long to find and visualize the genes with Geneious Pro software, The annotation file for chicken is available but not for my bird of interest (we have only scaffolds and contigs).
I appreciate if anyone can help me to find a very fast computational way for finding genes.

Thanks
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