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Old 02-26-2013, 02:33 AM   #31
laura
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Location: Cambridge UK

Join Date: Sep 2008
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These two data sets represent our most recent set of alignments and the frozen alignments used for the phase1 analysis effort

There will be overlapping individuals between the two sets but no bam files should be the same as an extended version of GRCh37 is being used for the post phase1 mapping

see http://www.1000genomes.org/faq/which...bly-do-you-use

You should be able to tell the difference between these files by the YYYYMMDD in their name as this points to the sequence index they were based on
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