View Single Post
Old 12-04-2010, 05:57 AM   #4
Senior Member
Location: Sweden

Join Date: Mar 2008
Posts: 324

Ok, since it is FastQ already you could just change 0123 to ACGT and remove the first two bases as you suggested. You could also try bowtie, it's faster and I think it will accept the file as is.
Chipper is offline   Reply With Quote