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Chipper · 12-04-2010, 05:57 AM

Ok, since it is FastQ already you could just change 0123 to ACGT and remove the first two bases as you suggested. You could also try bowtie, it's faster and I think it will accept the file as is.

12-04-2010, 05:57 AM	#4
Chipper Senior Member Location: Sweden Join Date: Mar 2008 Posts: 324	Ok, since it is FastQ already you could just change 0123 to ACGT and remove the first two bases as you suggested. You could also try bowtie, it's faster and I think it will accept the file as is.