Hi everybody,
I'm quite new to the field of sequencing and working on a project to find out which software we can use best to detect SNP's and indels using a recently bought 454.
So far I have compiled a small incomplete list of which tools to look at, but these are mostly limited to separate SNP detection tools. I think it is mostly lacking integrated solutions or software packages which also have SNP/indel detection applications besides alignment and/or assembly capabilities.
My list so far:
Seperate tools:
Gigabayes
454SWAP
VAAL
Integrated/package
454 software package
CLCbio Genomics Workbench
SeqMan Ngen
Is it perhaps wise to include alternative base-callers in the comparison as well?
I would be very happy to get any suggestions or tips from people working on 454 data as well.
Thank you for your time and input,
dePhi
I'm quite new to the field of sequencing and working on a project to find out which software we can use best to detect SNP's and indels using a recently bought 454.
So far I have compiled a small incomplete list of which tools to look at, but these are mostly limited to separate SNP detection tools. I think it is mostly lacking integrated solutions or software packages which also have SNP/indel detection applications besides alignment and/or assembly capabilities.
My list so far:
Seperate tools:
Gigabayes
454SWAP
VAAL
Integrated/package
454 software package
CLCbio Genomics Workbench
SeqMan Ngen
Is it perhaps wise to include alternative base-callers in the comparison as well?
I would be very happy to get any suggestions or tips from people working on 454 data as well.
Thank you for your time and input,
dePhi
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