hi, I need to convert my SRA file into fastq format.. for that i download the SRA toolkit from http://trace.ncbi.nlm.nih.gov/Traces...?view=software. I am using fedora 64 bit linux operating system and choose CentOS Linux 64 bit architecture as sra toolkit compressed file.
I Decompress the downloaded file, and copy the fastq-dump file to system path. Then I Convert SRA to fastq by using the command
fastq-dump <SRA archive file>
but I am getting an error like this..
2012-05-06T19:18:21 fastq-dump.2.1.12 err: column not found while opening table within short read archive module - failed SRR069603.sra
Written 0 spots total
=============================================================
An error occurred during processing.
A report was generated into the file '/root/ncbi_error_report.xml'.
If the problem persists, you may consider sending the file
to '[email protected]' for assistance.
==========================================================
somebody please tell me why it is happening and the solution..it is urgent!!
thank u!!
I Decompress the downloaded file, and copy the fastq-dump file to system path. Then I Convert SRA to fastq by using the command
fastq-dump <SRA archive file>
but I am getting an error like this..
2012-05-06T19:18:21 fastq-dump.2.1.12 err: column not found while opening table within short read archive module - failed SRR069603.sra
Written 0 spots total
=============================================================
An error occurred during processing.
A report was generated into the file '/root/ncbi_error_report.xml'.
If the problem persists, you may consider sending the file
to '[email protected]' for assistance.
==========================================================
somebody please tell me why it is happening and the solution..it is urgent!!
thank u!!
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