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Old 11-17-2013, 04:38 PM   #13
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Location: US

Join Date: Aug 2013
Posts: 123

If you follow the RNA-seq workflows (links in the first post above), we can actually work on the demo examples from Step 2. In other words, we can start with the pre-mapped raw read counts data (from previous steps), i.e. hnrnp.cnts stored in gageData. I would suggest you to run the demo example and explore gage/pathview functions and input/output data by yourself.
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