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Old 02-22-2014, 06:36 AM   #19
bigmw
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Location: US

Join Date: Aug 2013
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gene.idtype="KEGG" specifies the ID type used for the gene.data. It is not related to the error message, which indicates a download problem. As shown in your solution, this download problem is due to the wrong pathway IDs.

Quote:
Originally Posted by shriram View Post
############
Issue resolved
by taking substring of actual pathway name in kegg and specifying gene.idtype="KEGG"
path.ids <- substr(path.ids, 1, 8)
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