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Old 01-24-2018, 05:50 AM   #1
echo manolis
Junior Member
 
Location: Italy

Join Date: Jan 2018
Posts: 3
Default GATK4, bash script... step CreateSequenceGroupingTSV

Ubuntu, Bash 4.2.25



Hi!

I copy and paste the code about CreateSequenceGroupingTSV and in this way I created a python file...
When I'm going to run it I have the following error:

Code:
:~/GATK4/IlluminaExomePairEnd/0.pipe$ python 8.CreateSequenceGroupingTSV.py

File "8.CreateSequenceGroupingTSV.py", line 31
hg38_protection_tag = ":1+"
                          ^
IndentationError: unindent does not match any outer indentation level
the ^ symbol is under the last ", after +

Any help to fix it!?

Many thanks,
M
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