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Old 08-05-2019, 10:28 AM   #238
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Location: East Coast USA

Join Date: Feb 2008
Posts: 6,978

BBMap is not designed to work with protein data. You will have to find a different tool.

Take a look at blat from UCSC's Jim Kent. That should produce the stats in parse-able tab-delimited columner format. You will need to do post-processing to get the table you are looking for.
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