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Old 12-21-2011, 08:29 AM   #2
Peter (Biopython etc)
Location: Dundee, Scotland, UK

Join Date: Jul 2009
Posts: 1,543

When you say bam2fastq are you trying to recover the original read sequences (possibly paired) as FASTQ files, in their original orientation (reverse complement undone if mapped to the reverse strand)?
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