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Old 12-21-2011, 08:29 AM   #2
maubp
Peter (Biopython etc)
 
Location: Dundee, Scotland, UK

Join Date: Jul 2009
Posts: 1,543
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When you say bam2fastq are you trying to recover the original read sequences (possibly paired) as FASTQ files, in their original orientation (reverse complement undone if mapped to the reverse strand)?
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