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Old 12-21-2011, 08:37 AM   #4
Peter (Biopython etc)
Location: Dundee, Scotland, UK

Join Date: Jul 2009
Posts: 1,543

I think EMBOSS seqret can do BAM to FASTQ, but I'm not sure what it does with pairs or reads mapped to the reverse strand.

I did this once myself using a custom Python script.
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