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Old 12-24-2011, 06:27 AM   #10
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Location: Boston

Join Date: Feb 2008
Posts: 693

The latest samtools actually has a hidden command: bam2fq, which converts a BAM to *single-end* FASTQ.

@Richard: samtools comes with a single-header hash table library khash.h. BTW, I could not open your link. I would be interested in an AVL tree implementation in C. I know a couple single-header libraries for B-tree and red-black trees.
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