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Old 05-10-2012, 12:22 PM   #12
Location: Atlanta, US

Join Date: Jan 2010
Posts: 59

Hi guys,
I've run into a more complex problem regarding bam to fastq conversion. Somehow my bam files have some unpaired reads mixed with the paired-end reads. I was running Picard but that seems to terminate when it finds unpaired read.
Any suggestions on how to proceed now?

Thanks in advance.
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