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Old 12-17-2012, 04:48 AM   #19
cjp
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Location: Cambridge, United Kingdom

Join Date: Jun 2011
Posts: 58
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Hi,

It worked for me.


% tar -xvzf bam2fastq-1.1.0.tgz
bam2fastq-1.1.0/
bam2fastq-1.1.0/bam2fastq.cpp
bam2fastq-1.1.0/HISTORY.txt
bam2fastq-1.1.0/LICENSE
bam2fastq-1.1.0/Makefile
bam2fastq-1.1.0/README.txt
bam2fastq-1.1.0/samtools/
bam2fastq-1.1.0/samtools/._AUTHORS
bam2fastq-1.1.0/samtools/AUTHORS
bam2fastq-1.1.0/samtools/._bam.c
bam2fastq-1.1.0/samtools/bam.c
bam2fastq-1.1.0/samtools/._bam.h
bam2fastq-1.1.0/samtools/bam.h
bam2fastq-1.1.0/samtools/._bam_aux.c
bam2fastq-1.1.0/samtools/bam_aux.c
bam2fastq-1.1.0/samtools/._bam_color.c
bam2fastq-1.1.0/samtools/bam_color.c
bam2fastq-1.1.0/samtools/._bam_endian.h
bam2fastq-1.1.0/samtools/bam_endian.h
bam2fastq-1.1.0/samtools/._bam_import.c
bam2fastq-1.1.0/samtools/bam_import.c
bam2fastq-1.1.0/samtools/._bam_index.c
bam2fastq-1.1.0/samtools/bam_index.c
bam2fastq-1.1.0/samtools/._bam_lpileup.c
bam2fastq-1.1.0/samtools/bam_lpileup.c
bam2fastq-1.1.0/samtools/._bam_maqcns.c
bam2fastq-1.1.0/samtools/bam_maqcns.c
bam2fastq-1.1.0/samtools/._bam_maqcns.h
bam2fastq-1.1.0/samtools/bam_maqcns.h
bam2fastq-1.1.0/samtools/._bam_mate.c
bam2fastq-1.1.0/samtools/bam_mate.c
bam2fastq-1.1.0/samtools/._bam_md.c
bam2fastq-1.1.0/samtools/bam_md.c
bam2fastq-1.1.0/samtools/._bam_pileup.c
bam2fastq-1.1.0/samtools/bam_pileup.c
bam2fastq-1.1.0/samtools/._bam_plcmd.c
bam2fastq-1.1.0/samtools/bam_plcmd.c
bam2fastq-1.1.0/samtools/._bam_reheader.c
bam2fastq-1.1.0/samtools/bam_reheader.c
bam2fastq-1.1.0/samtools/._bam_rmdup.c
bam2fastq-1.1.0/samtools/bam_rmdup.c
bam2fastq-1.1.0/samtools/._bam_rmdupse.c
bam2fastq-1.1.0/samtools/bam_rmdupse.c
bam2fastq-1.1.0/samtools/._bam_sort.c
bam2fastq-1.1.0/samtools/bam_sort.c
bam2fastq-1.1.0/samtools/._bam_stat.c
bam2fastq-1.1.0/samtools/bam_stat.c
bam2fastq-1.1.0/samtools/._bam_tview.c
bam2fastq-1.1.0/samtools/bam_tview.c
bam2fastq-1.1.0/samtools/._bamtk.c
bam2fastq-1.1.0/samtools/bamtk.c
bam2fastq-1.1.0/samtools/._bgzf.c
bam2fastq-1.1.0/samtools/bgzf.c
bam2fastq-1.1.0/samtools/._bgzf.h
bam2fastq-1.1.0/samtools/bgzf.h
bam2fastq-1.1.0/samtools/._bgzip.c
bam2fastq-1.1.0/samtools/bgzip.c
bam2fastq-1.1.0/samtools/._ChangeLog
bam2fastq-1.1.0/samtools/ChangeLog
bam2fastq-1.1.0/samtools/COPYING
bam2fastq-1.1.0/samtools/._examples
bam2fastq-1.1.0/samtools/examples/
bam2fastq-1.1.0/samtools/._faidx.c
bam2fastq-1.1.0/samtools/faidx.c
bam2fastq-1.1.0/samtools/._faidx.h
bam2fastq-1.1.0/samtools/faidx.h
bam2fastq-1.1.0/samtools/._glf.c
bam2fastq-1.1.0/samtools/glf.c
bam2fastq-1.1.0/samtools/._glf.h
bam2fastq-1.1.0/samtools/glf.h
bam2fastq-1.1.0/samtools/._INSTALL
bam2fastq-1.1.0/samtools/INSTALL
bam2fastq-1.1.0/samtools/._kaln.c
bam2fastq-1.1.0/samtools/kaln.c
bam2fastq-1.1.0/samtools/._kaln.h
bam2fastq-1.1.0/samtools/kaln.h
bam2fastq-1.1.0/samtools/._khash.h
bam2fastq-1.1.0/samtools/khash.h
bam2fastq-1.1.0/samtools/._klist.h
bam2fastq-1.1.0/samtools/klist.h
bam2fastq-1.1.0/samtools/._knetfile.c
bam2fastq-1.1.0/samtools/knetfile.c
bam2fastq-1.1.0/samtools/._knetfile.h
bam2fastq-1.1.0/samtools/knetfile.h
bam2fastq-1.1.0/samtools/._kseq.h
bam2fastq-1.1.0/samtools/kseq.h
bam2fastq-1.1.0/samtools/._ksort.h
bam2fastq-1.1.0/samtools/ksort.h
bam2fastq-1.1.0/samtools/._kstring.c
bam2fastq-1.1.0/samtools/kstring.c
bam2fastq-1.1.0/samtools/._kstring.h
bam2fastq-1.1.0/samtools/kstring.h
bam2fastq-1.1.0/samtools/._Makefile
bam2fastq-1.1.0/samtools/Makefile
bam2fastq-1.1.0/samtools/._Makefile.mingw
bam2fastq-1.1.0/samtools/Makefile.mingw
bam2fastq-1.1.0/samtools/._misc
bam2fastq-1.1.0/samtools/misc/
bam2fastq-1.1.0/samtools/NEWS
bam2fastq-1.1.0/samtools/._razf.c
bam2fastq-1.1.0/samtools/razf.c
bam2fastq-1.1.0/samtools/._razf.h
bam2fastq-1.1.0/samtools/razf.h
bam2fastq-1.1.0/samtools/._razip.c
bam2fastq-1.1.0/samtools/razip.c
bam2fastq-1.1.0/samtools/._sam.c
bam2fastq-1.1.0/samtools/sam.c
bam2fastq-1.1.0/samtools/._sam.h
bam2fastq-1.1.0/samtools/sam.h
bam2fastq-1.1.0/samtools/._sam_header.c
bam2fastq-1.1.0/samtools/sam_header.c
bam2fastq-1.1.0/samtools/._sam_header.h
bam2fastq-1.1.0/samtools/sam_header.h
bam2fastq-1.1.0/samtools/._sam_view.c
bam2fastq-1.1.0/samtools/sam_view.c
bam2fastq-1.1.0/samtools/._samtools.1
bam2fastq-1.1.0/samtools/samtools.1
bam2fastq-1.1.0/samtools/samtools.txt
bam2fastq-1.1.0/samtools/._win32
bam2fastq-1.1.0/samtools/win32/
bam2fastq-1.1.0/samtools/win32/._xcurses.h
bam2fastq-1.1.0/samtools/win32/xcurses.h
bam2fastq-1.1.0/samtools/win32/._zconf.h
bam2fastq-1.1.0/samtools/win32/zconf.h
bam2fastq-1.1.0/samtools/win32/._zlib.h
bam2fastq-1.1.0/samtools/win32/zlib.h
bam2fastq-1.1.0/samtools/misc/._blast2sam.pl
bam2fastq-1.1.0/samtools/misc/blast2sam.pl
bam2fastq-1.1.0/samtools/misc/._bowtie2sam.pl
bam2fastq-1.1.0/samtools/misc/bowtie2sam.pl
bam2fastq-1.1.0/samtools/misc/._export2sam.pl
bam2fastq-1.1.0/samtools/misc/export2sam.pl
bam2fastq-1.1.0/samtools/misc/._interpolate_sam.pl
bam2fastq-1.1.0/samtools/misc/interpolate_sam.pl
bam2fastq-1.1.0/samtools/misc/._Makefile
bam2fastq-1.1.0/samtools/misc/Makefile
bam2fastq-1.1.0/samtools/misc/._maq2sam.c
bam2fastq-1.1.0/samtools/misc/maq2sam.c
bam2fastq-1.1.0/samtools/misc/._md5.c
bam2fastq-1.1.0/samtools/misc/md5.c
bam2fastq-1.1.0/samtools/misc/._md5.h
bam2fastq-1.1.0/samtools/misc/md5.h
bam2fastq-1.1.0/samtools/misc/._md5fa.c
bam2fastq-1.1.0/samtools/misc/md5fa.c
bam2fastq-1.1.0/samtools/misc/._novo2sam.pl
bam2fastq-1.1.0/samtools/misc/novo2sam.pl
bam2fastq-1.1.0/samtools/misc/._psl2sam.pl
bam2fastq-1.1.0/samtools/misc/psl2sam.pl
bam2fastq-1.1.0/samtools/misc/._sam2vcf.pl
bam2fastq-1.1.0/samtools/misc/sam2vcf.pl
bam2fastq-1.1.0/samtools/misc/._samtools.pl
bam2fastq-1.1.0/samtools/misc/samtools.pl
bam2fastq-1.1.0/samtools/misc/._soap2sam.pl
bam2fastq-1.1.0/samtools/misc/soap2sam.pl
bam2fastq-1.1.0/samtools/misc/._varfilter.py
bam2fastq-1.1.0/samtools/misc/varfilter.py
bam2fastq-1.1.0/samtools/misc/._wgsim.c
bam2fastq-1.1.0/samtools/misc/wgsim.c
bam2fastq-1.1.0/samtools/misc/._wgsim_eval.pl
bam2fastq-1.1.0/samtools/misc/wgsim_eval.pl
bam2fastq-1.1.0/samtools/misc/._zoom2sam.pl
bam2fastq-1.1.0/samtools/misc/zoom2sam.pl
bam2fastq-1.1.0/samtools/examples/._00README.txt
bam2fastq-1.1.0/samtools/examples/00README.txt
bam2fastq-1.1.0/samtools/examples/._bam2bed.c
bam2fastq-1.1.0/samtools/examples/bam2bed.c
bam2fastq-1.1.0/samtools/examples/._calDepth.c
bam2fastq-1.1.0/samtools/examples/calDepth.c
bam2fastq-1.1.0/samtools/examples/._ex1.fa
bam2fastq-1.1.0/samtools/examples/ex1.fa
bam2fastq-1.1.0/samtools/examples/._ex1.sam.gz
bam2fastq-1.1.0/samtools/examples/ex1.sam.gz
bam2fastq-1.1.0/samtools/examples/._Makefile
bam2fastq-1.1.0/samtools/examples/Makefile
bam2fastq-1.1.0/samtools/examples/._toy.fa
bam2fastq-1.1.0/samtools/examples/toy.fa
bam2fastq-1.1.0/samtools/examples/._toy.sam
bam2fastq-1.1.0/samtools/examples/toy.sam
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