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Old 07-06-2014, 04:33 PM   #3
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Location: San Diego, CA

Join Date: Oct 2013
Posts: 138

It looks like each run is generating something on the order of 10s of thousands of reads, so you're not going to learn much in the way of relative expression levels. However, if you're careful with your prep to get truly full length cDNAs, you might get some interesting info on splice isoforms (similar to what PacBio is doing with their ISO-Seq application). If you end up doing it, I hope you come back to share the data - it should be quite interesting!
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