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Old 04-13-2011, 12:48 AM   #1
lei
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Location: germany

Join Date: Mar 2010
Posts: 14
Default some error message from BFAST match

hi,

I got some error message when I use BFAST for solid data mapping:

error 1:

In function "RGMatchPrint": Fatal Error[WriteFileError]. Message: Could not write m->readLength, m->qualLength, m->read, m->qual, m->maxReached, and m->numEntries.
The file stream error was:: No space left on device
***** Exiting due to errors *****

Does it mean I don't have enough memory or space to run it? But I run it on a cluster, it should have enough memory or space.

error 2:

In function "RGMatchPrint": Fatal Error[WriteFileError]. Message: Could not write masks[i].
The file stream error was:: No space left on device
***** Exiting due to errors *****

error 3:

************************************************************
Searching for main indexes...
************************************************************

In function "GetIndexFileNames": Fatal Error[OutOfRange]. Variable/Value: /icgc/lsdf/mb/analysis_final/reference/bfastCS/hg19.fa.cs.
Message: Could not find any indexes with the given prefix.
***** Exiting due to errors *****

For this error, I do have indexes there. Sometimes it can find them, sometimes it reports this error. So I don't understand why.
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