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Old 05-19-2017, 04:59 AM   #3
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Location: Uppsala

Join Date: Apr 2009
Posts: 5

The Per base sequence content also seems problematic, and other plots are fine, especially the Sequence Quality is very good.

Have trimmed the adapters and the low-quality reads before assembly.

Originally Posted by mastal View Post
What do the other FastQC plots look like, the per base sequence quality, and the per base sequence content?

Have you done any adapter or quality trimming before doing the assembly?
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Last edited by wb1016; 05-19-2017 at 05:09 AM.
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