Hello,
I am running Newbler under several parameters and have some questions.
1) Is there any parameter that specifies the coverage of the sample used by Newbler in the assembly process?
2) If there are areas with high coverage (eg repetitive regions) regions with low coverage are simply excluded from the assembly process because they are considered as sequencing errors (due to low coverage)?
I'm trying to assemble a genome that has major discrepancies in coverage and my results are not very good.
Thanks in advance,
André
I am running Newbler under several parameters and have some questions.
1) Is there any parameter that specifies the coverage of the sample used by Newbler in the assembly process?
2) If there are areas with high coverage (eg repetitive regions) regions with low coverage are simply excluded from the assembly process because they are considered as sequencing errors (due to low coverage)?
I'm trying to assemble a genome that has major discrepancies in coverage and my results are not very good.
Thanks in advance,
André
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