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Old 06-20-2010, 02:09 AM   #55
agc
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Location: Jerusalem

Join Date: May 2010
Posts: 26
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I'd like to run FastQC on SOLiD reads. I saw that someone did this using solid2fastq. Is it possible to do it without running solid2fastq? IE, would it work with only the SOLiD 'quals' file?

EDIT: After running FastQC on SOLiD files converted to fastq files via solid2fastq, the results file says (under basic statistics):
File type Conventional base calls

Should it have recognized it as colorspace?

Thanks!

Last edited by agc; 06-20-2010 at 03:59 AM.
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