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Old 11-09-2015, 02:11 AM   #10
Devon Ryan
Location: Freiburg, Germany

Join Date: Jul 2011
Posts: 3,480

Don't include a term for replicates in your models.

Your full model should just be ~hours and the reduced ~1. Note that "hours" MUST be a factor in order for this to work. I see that you have a batch effect, in which case a full model of ~batch+hours and a reduced model of ~batch will hopefully work. Make sure that "batch" is also a factor.
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