Thread: Cuffmerge error
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Old 11-25-2015, 06:51 AM   #4
alexGrenoble
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Location: grenoble

Join Date: Nov 2013
Posts: 2
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is there a specific reason that different genes merge together in cuffmerge? Just because they are close to each other?

What I have is 3 different genes, that have the same assembled merged gene ID but have different transcripts.

I was expecting that since cuffmerge merges the gene IDs, it would merge the transcripts as well, and this could have been the reason that it merges the genes together. But in my case I get different assembled merged transcript IDs.

Any idea why?
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