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Old 10-25-2012, 11:41 AM   #2
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Location: Ohio

Join Date: Jan 2010
Posts: 144

I am not sure if this applies to meta-velvet, I only have used the original. However, with standard velvet, it reports the contig lengths in kmers rather than nt in the fasta headers. So is it possible that you have contigs with 21 kmers, that are actually 41 nt long?
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