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Old 04-09-2012, 06:04 AM   #369
Tahir Mujtaba
Junior Member
 
Location: Sweden

Join Date: Mar 2012
Posts: 4
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Hello, do you know BOWTIE?,Can you help me learning this tool, i am new to Bioinformatics.
Quote:
Originally Posted by rathankar View Post
dear friends
I am new member for NGS analysis and have the following data. any help would be appreciated from the members or the administrator of the group
1. i am working on mus musculus and in building the indexes, bowtie takes a long time, more than 2 days for all the chromosomes. instead of building the indexes together, which takes a long time for buffering, can i build it one by one?. it takes hardly 25 mins for a single chromosome indexing and hence one can build the indexes for all the chromosomes within 500 mins or less than 10 hrs. pls reply

with regards
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