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Old 04-01-2015, 06:10 AM   #4
Senior Member
Location: East Coast USA

Join Date: Feb 2008
Posts: 7,049

Was able to get a tblastx search to work against nt with 18G of RAM (and 4 threads) with a 2 kb query. That may be the best combination to start. Hopefully that will work with your cluster and PBS pro as well.

This thread has some discussion that you should consider while planning your searches:
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