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  • CASAVA v1.8 (Bcl to Fastq)

    Dear All,

    I have problem with prepare .Fastq files from .bcl files
    When I compile configureBclToFastq.pl script there is information:

    [configureBclToFastq.pl] WARNING: 'LocationFileType' element not found in .../Data/Intensities/BaseCalls/../RTAConfiguration.xml
    RTAConfiguration.xml is present in catalog
    .../Data/Intensities/BaseCalls/RTAConfiguration.xml
    How do I define the right path?

    Thans for any help,
    Sorry if this question is so trivial, but I'm new in this business.

    With kind regards,
    Kacper

  • #2
    I actually asked tech support about this, here is their answer:

    Hi Louis,
    This warning message you see is due to a slight incompatibility between RTA/OLB versions and CASAVA 1.8 standard requirements and there should not be any issues during data analysis as it is not an error message.

    Regards,
    Sid


    -----<Email Received>-----
    From: ..
    Sent: 6/26/2011 12:18 PM PDT
    To: [email protected]
    CC:
    Subject: configureBclToFastq.pl warning

    When running configureBclToFastq.pl I got this:

    WARNING: 'LocationFileType' element not found in
    /data/hiseq67/110617_SN909_0050_BD040RACXX_0047HS11B/Data/Intensities/BaseCalls/../RTAConfiguration.xml


    What can we do to remove this warning?
    It's not an important warning but I just want to make sure we fill out
    everything in case.

    Thanks
    Louis

    Comment


    • #3
      Thank you Louis
      Kacper

      Comment

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