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Old 11-20-2014, 08:45 AM   #8
Location: Germany

Join Date: Dec 2013
Posts: 16

I am not sure if my quick coverage look-up for those introns makes sense, maybe this would be important - I took an average of counts from all conditions for any given intron and divided this value by the width of the intron (all based on values in DEXSeq output).
I think it gives a rough estimate about the abundance of reads for a given event ?

Below is a plot of those events. There is a cutoff for abs(log2FC) of 0.5. The y-axis is the value I just mentioned (rough estimate of coverage).

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