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Old 07-29-2010, 02:25 PM   #5
Location: USA

Join Date: Aug 2009
Posts: 17
Default bwa minimum map quality

Is there as anything as minimum or optimal mapq in the bwa.

I plan to take unique query sequences with highest mapq but still not able to figure the cutoff to use it for the analysis.

Any help is appreciated!!
donniemarco is offline   Reply With Quote