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Old 07-29-2010, 02:25 PM   #5
donniemarco
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Location: USA

Join Date: Aug 2009
Posts: 17
Default bwa minimum map quality

Is there as anything as minimum or optimal mapq in the bwa.

I plan to take unique query sequences with highest mapq but still not able to figure the cutoff to use it for the analysis.

Any help is appreciated!!
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