Thread: 454 assemly
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Old 01-19-2009, 09:12 AM   #3
johnwhitaker
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Location: leeds

Join Date: Jan 2009
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Thanks for your detailed reply.

I had been thinking about clustering the contigs today. I have used blastclust before also I was having a look at CLOBB (http://www.biomedcentral.com/1471-2105/3/31/abstract) as it seems to be similar to blastclust but optimised for EST clustering. Also I found a program called wcd (http://bioinformatics.oxfordjournals...ull/24/13/1542) that is also designed EST data.

I think I'll give the clustering a go. If I have lots of problems then I might look into using the pipeline you suggested.
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