SEQanswers - View Single Post

johnwhitaker · 01-19-2009, 09:12 AM

Thanks for your detailed reply.

I had been thinking about clustering the contigs today. I have used blastclust before also I was having a look at CLOBB (http://www.biomedcentral.com/1471-2105/3/31/abstract) as it seems to be similar to blastclust but optimised for EST clustering. Also I found a program called wcd (http://bioinformatics.oxfordjournals...ull/24/13/1542) that is also designed EST data.

I think I'll give the clustering a go. If I have lots of problems then I might look into using the pipeline you suggested.

01-19-2009, 09:12 AM	#3
johnwhitaker Junior Member Location: leeds Join Date: Jan 2009 Posts: 6	Thanks for your detailed reply. I had been thinking about clustering the contigs today. I have used blastclust before also I was having a look at CLOBB (http://www.biomedcentral.com/1471-2105/3/31/abstract) as it seems to be similar to blastclust but optimised for EST clustering. Also I found a program called wcd (http://bioinformatics.oxfordjournals...ull/24/13/1542) that is also designed EST data. I think I'll give the clustering a go. If I have lots of problems then I might look into using the pipeline you suggested.