View Single Post
Old 08-10-2011, 01:20 PM   #10
donniemarco
Member
 
Location: USA

Join Date: Aug 2009
Posts: 17
Default

Quote:
Originally Posted by mghita View Post
Hi,

What options should I use in bwa in order to obtain perfect maps only? I have two references and I would like to get the unique perfect maps to both of them (in two different files if possible).

Thanks!
I think its -F 4 option in BWA!!!
donniemarco is offline   Reply With Quote