View Single Post
Old 08-27-2015, 06:11 AM   #2
azneto
Member
 
Location: Brazil

Join Date: Dec 2009
Posts: 24
Default

I like to use flash2 to do it (https://github.com/dstreett/FLASH2).
These software assume both files contain the exact same number of reads.
You should manage to get rid of unpaired reads.
Please find attached a script that can solve that.
-Cheers
Attached Files
File Type: pl mergeShuffledFastqSeqs.pl (4.5 KB, 4 views)
azneto is offline   Reply With Quote