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Old 01-18-2014, 02:41 AM   #1
oakeley
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Location: Switzerland

Join Date: Jul 2010
Posts: 3
Default FALCON assembler

I am trying to figure out the new diploid assembler (FALCON) from PacBio. I have a really silly question. The first step parameters (according to devnet) are:

python get_rdata.py queries.fofn targets.fofn m4.fofn 72 0 16 8 64 50 50 | falcon_wrap.py > p-reads-0.fa

There are three "file of files" requested but it is unclear which smrtcell files need to be in them. I guess that one file should have the "bax.h5" files, another the "bas.h5" (perhaps) but after that I am a bit stuck...

If anyone has got this to work could you post an example of which files should be linked in the queries, targets and m4 files?

Thanks

Edward
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