View Single Post
Old 01-18-2014, 02:41 AM   #1
Junior Member
Location: Switzerland

Join Date: Jul 2010
Posts: 3
Default FALCON assembler

I am trying to figure out the new diploid assembler (FALCON) from PacBio. I have a really silly question. The first step parameters (according to devnet) are:

python queries.fofn targets.fofn m4.fofn 72 0 16 8 64 50 50 | > p-reads-0.fa

There are three "file of files" requested but it is unclear which smrtcell files need to be in them. I guess that one file should have the "bax.h5" files, another the "bas.h5" (perhaps) but after that I am a bit stuck...

If anyone has got this to work could you post an example of which files should be linked in the queries, targets and m4 files?


oakeley is offline   Reply With Quote