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Old 03-23-2010, 04:08 AM   #4
Peter (Biopython etc)
Location: Dundee, Scotland, UK

Join Date: Jul 2009
Posts: 1,543

I've done this kind of workflow with Python scripts: take FASTA genome, find ORFs, BLAST them, produce a crudely annotated GenBank or EMBL file, give this to our Biologists to look at in Artemis or their tool of choice. This gives me the freedom to tweak everything (for example how to handle alternative start codons, which BLAST database to use, etc).
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