Hi,
I am new to SNP calling and would appreciate some input. I want to try and call SNP's for a specific organisms. The hurdles I have is, I do not have a reference genome to map against and I have a very low coverage 4x per organisms.
Any suggestions would be appreciated.
I am new to SNP calling and would appreciate some input. I want to try and call SNP's for a specific organisms. The hurdles I have is, I do not have a reference genome to map against and I have a very low coverage 4x per organisms.
Any suggestions would be appreciated.
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