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Old 11-05-2012, 12:06 AM   #3
Apexy
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Location: Africa

Join Date: Apr 2011
Posts: 62
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Hi,

You could try out AUGUSTUS http://augustus.gobics.de/ . It has been extensively tested on fungal sequences and there are quiet of good number of training sets from fungi in the package. It also enables you to use RNA-Seq data should you have one. The annotations as suggested by zhaowei such as related proteomes can also for used to constrain the prediction.

HTH

Enjoy!
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