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Old 12-16-2009, 06:22 AM   #4
lindseyjane
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Location: Oxford

Join Date: Apr 2009
Posts: 28
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ok, thanks, I am learning to use perl, not familiar with python, so I will write a script to do this in perl.

Just to clarify, do you know whether I need to alter the reverse read to make the sequence on the same strand as the forward read?

eg if I have in the sequence.txt file
Forward read AAAATTT
Reverse read CCGGGG

I need to interleave them as:
AAAATTT
CCCCGG
is this correct?
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