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Old 09-22-2016, 09:18 AM   #3
Brian Bushnell
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Location: Walnut Creek, CA

Join Date: Jan 2014
Posts: 2,707

BBDuk will happily remove adapters from the 5' end using the flag "ktrim=l". But as nucacidhunter stated, those are atypical and probably not of concern unless you are doing deep multiplexing with inline barcodes or an unusual long-mate pair library.
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