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Old 07-19-2017, 01:09 AM   #3
gauravdube
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Location: India

Join Date: Feb 2014
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Quote:
Originally Posted by GenoMax View Post
The error is about the program not finding this file "../../info/training.trace". Is that file present in location relative to the directory you are running your command from?
Hi GenoMax,

After posting, I have used the same command on another assembly which has better genome statistics than the previous one and it worked !!! It seems the problem is with 'probuild', as it requires atleast 10Mb of good data for training (ref: [https://www.researchgate.net/post/Genemark-ES_error]), which could not be retrieved from the poor assemblies. So I used AUGUSTUS instead for the poor ones and it is working. Anyway, thats the max I can make out of poor ones.

Thanks.
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