View Single Post
Old 01-23-2020, 03:00 PM   #3
ghd21
Junior Member
 
Location: Australia

Join Date: Jan 2020
Posts: 2
Default

Thanks for your reply! Ambiguous reads are just assigned to the first best site so I don't think that is the reason, it appears that not all the reads are attempting to be mapped? When I change the ambiguous flag the number of reads being mapped doesn't change, only where the reads are assigned, any ideas?
ghd21 is offline   Reply With Quote