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Old 10-18-2011, 09:20 AM   #2
maubp
Peter (Biopython etc)
 
Location: Dundee, Scotland, UK

Join Date: Jul 2009
Posts: 1,543
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What version numbers? That can make a difference.

I don't use -num_descriptions and -num_alignments having found them behaving oddly (something at least partially addressed in a recent BLAST+ release). Have you tried with -max_target_seqs instead?
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