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Old 11-09-2012, 10:19 AM   #1
Junior Member
Location: Kansas

Join Date: Nov 2012
Posts: 2
Default clc exporting mapped reads

After mapping some Illumina short-reads back to a reference, I want to be able to export the reads that were successfully mapped for use in mapping to a different reference. For the unmapped reads, this seems possible to do as you can set them aside in their own list as part of the mapping results. Any suggestions for manipulating a list of mapped reads within CLC or exporting them for use in a different program?
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