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Old 11-09-2012, 11:25 AM   #2
GenoMax
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Location: East Coast USA

Join Date: Feb 2008
Posts: 7,060
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Probably more than one way to do this but here is one:

1. Open the aligned sequence dataset by double clicking.
2. In the graphics window that opens, "right click" on the image somewhere in the region that shows the alignments and then Choose "Extract" Sequences.
3. That will create new entries for the sequence(s) in the navigation area. Single and paired end sequences are saved as separate datasets with "extracted sequences" as part of the name.
4. Select the newly created dataset(s) in the navigation area and then choose "export".
5. Select the format to export (e.g. fasta, fastq and others) to local storage.

Last edited by GenoMax; 11-09-2012 at 11:28 AM.
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