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Old 11-04-2011, 12:52 PM   #17
aggp11
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Location: Wisconsin

Join Date: Jun 2011
Posts: 87
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Quote:
Originally Posted by mimi_lupton View Post
Dear all,
I have a couple of questions regarding CNV-seq.
I am having a play around with some DNA sequencing that is from custom capture. I have analysed some BAM files using the program. Some work fine, but some file combinations come up with an error, which is strange as all the data has been produced and analysed in exactly the same way. The error is;

"Can't use an undefined value as an ARRAY reference at /share/apps/cnv-seq_1.0/bin/cnv-seq.pl line 204, <REF> line 6460211."

I think this is some kind of Perl script error??

Also does anyone have any experience of using capture data with CNV-seq? any advice would be greatly appreciated.

Thanks for you help
Hello mimi,

I am trying to work on custom capture data usin cnv-seq. Could you enlighten me on how it worked for you and any suggestions on how to use it would be greatly appreciated.

Thanks,
Praful
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