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Old 11-24-2011, 02:38 AM   #19
DineshCyanam
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Location: Ann Arbor

Join Date: Oct 2010
Posts: 35
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Quote:
Originally Posted by parveendabas View Post
Hello

I am analyzing CNVs for the first time or rather new to CNV-seq. Manual is pretty clear but i have one very basic doubt. I have my .bam file for which i can generate my.hits file as well using samtools. BUT from where do i get this ref.hits file. I have only one .bam file thats it which i would be using for my.hits file.. Some guidance?
Hi Parveen,
The ref.hits would be from a normal/control sample... or if you don't have one... You can get the normal bam file from the 1000 Genomes project.

-Dinesh

Last edited by DineshCyanam; 11-24-2011 at 02:47 AM.
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