Hello everyone,
I'd like to present Seurat, an analysis tool that we developed here at TGen. It detects somatic mutation (SNVs, indels, structural variance) and allelic imbalance in paired tumor/normal genome and transcriptome data.
The code was made into a GATK module, so its use will probably be familiar to some. Input is indexed BAMs, and output is split into a VCF file for simple events and a tab-delimited text file for larger events.
The latest release (and documentation) is at https://sourceforge.net/projects/seurat/ and we'd appreciate feedback, comments and suggestions! Right now the software is free from academic and research use.
Thanks!
-- Alexis Christoforides
I'd like to present Seurat, an analysis tool that we developed here at TGen. It detects somatic mutation (SNVs, indels, structural variance) and allelic imbalance in paired tumor/normal genome and transcriptome data.
The code was made into a GATK module, so its use will probably be familiar to some. Input is indexed BAMs, and output is split into a VCF file for simple events and a tab-delimited text file for larger events.
The latest release (and documentation) is at https://sourceforge.net/projects/seurat/ and we'd appreciate feedback, comments and suggestions! Right now the software is free from academic and research use.
Thanks!
-- Alexis Christoforides
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