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Old 05-19-2021, 05:36 AM   #4
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Location: East Coast USA

Join Date: Feb 2008
Posts: 7,127

That would be fine. Looks like you can use `outm=` if you need just mapped reads. I have normally used `out=` with `mappedonly=t` but those two look to be equivalent.

It should not take 10 days to complete an analysis unless you have a huge dataset.
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