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Old 01-11-2013, 02:41 AM   #10
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Join Date: Mar 2011
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Hi all, I can't figure out how to specify loseless compression using cramTools (ie retain all quality score info), can someone help me out? In NGCs paper they state a few flags which seem to be discontinued in 1.0. Presumably I specify using --lossy-quality-score-spec but I can't figure out how to set it to 'any/all'. I appreciate any help/ideas on this. Also if I am missing the point and the compression inherently removes quality scores I apologise in advance, I am n00 to the area=P

Last edited by bruce01; 01-11-2013 at 02:55 AM.
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